Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/03_03_BGI_data/hsRad_2/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  19,993,062
 Normal Paired: 11,826,954 (59.16%)
 Chimeric Paired: 6,868,627 (34.36%)
 Chimeric Ambiguous: 1,196,141 (5.98%)
 Unmapped: 101,340 (0.51%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 18,695,581 (93.51%)
WARN [2025-03-04T03:01:12,385]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 18,090,736 (90.49%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 604,845 (3.03%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,651,667 (13.26% / 14.66%)
Hi-C Contacts: 15,439,069 (77.22% / 85.34%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 66%
 Cis/all (FF and RR orient): 90.1%
Inter-chromosomal: 519,260  (2.60% / 2.87%)
Intra-chromosomal: 14,919,809  (74.62% / 82.47%)
Short Range (<20,000bp): 11,583,052  (57.94% / 64.03%)
Long Range (>20,000bp): 3,336,757  (16.69% / 18.44%)