Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/03_03_BGI_data/hsRad_aux_1/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  16,431,097
 Normal Paired: 9,338,282 (56.83%)
 Chimeric Paired: 6,035,969 (36.74%)
 Chimeric Ambiguous: 1,002,431 (6.10%)
 Unmapped: 54,415 (0.33%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 15,374,251 (93.57%)
WARN [2025-03-04T03:40:41,531]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 14,934,898 (90.89%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 439,353 (2.67%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,208,105 (13.44% / 14.78%)
Hi-C Contacts: 12,726,793 (77.46% / 85.22%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 73% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 61%
 Cis/all (FF and RR orient): 91.4%
Inter-chromosomal: 425,847  (2.59% / 2.85%)
Intra-chromosomal: 12,300,946  (74.86% / 82.36%)
Short Range (<20,000bp): 9,037,343  (55.00% / 60.51%)
Long Range (>20,000bp): 3,263,603  (19.86% / 21.85%)