Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/03_03_BGI_data/hsRad_aux_1/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20 Sequenced Read Pairs: 16,431,097 Normal Paired: 9,338,282 (56.83%) Chimeric Paired: 6,035,969 (36.74%) Chimeric Ambiguous: 1,002,431 (6.10%) Unmapped: 54,415 (0.33%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 15,374,251 (93.57%) WARN [2025-03-04T03:40:41,531] [Globals.java:138] [main] Development mode is enabled Unique Reads: 14,934,898 (90.89%) PCR Duplicates: 0 (0.00%) Optical Duplicates: 439,353 (2.67%) Library Complexity Estimate: 0 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 2,208,105 (13.44% / 14.78%) Hi-C Contacts: 12,726,793 (77.46% / 85.22%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 9% - 73% - 9% - 9% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 61% Cis/all (FF and RR orient): 91.4% Inter-chromosomal: 425,847 (2.59% / 2.85%) Intra-chromosomal: 12,300,946 (74.86% / 82.36%) Short Range (<20,000bp): 9,037,343 (55.00% / 60.51%) Long Range (>20,000bp): 3,263,603 (19.86% / 21.85%)