Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/03_03_BGI_data/hsRad_aux_2/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  26,592,156
 Normal Paired: 13,450,261 (50.58%)
 Chimeric Paired: 10,762,197 (40.47%)
 Chimeric Ambiguous: 2,302,055 (8.66%)
 Unmapped: 77,643 (0.29%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 24,212,458 (91.05%)
WARN [2025-03-04T04:35:20,137]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 23,461,745 (88.23%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 750,713 (2.82%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,256,687 (8.49% / 9.62%)
Hi-C Contacts: 21,205,058 (79.74% / 90.38%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 69% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 54%
 Cis/all (FF and RR orient): 86.3%
Inter-chromosomal: 1,323,122  (4.98% / 5.64%)
Intra-chromosomal: 19,881,936  (74.77% / 84.74%)
Short Range (<20,000bp): 13,295,774  (50.00% / 56.67%)
Long Range (>20,000bp): 6,586,162  (24.77% / 28.07%)