Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.13" 2024-10-15; juicer.sh -g T2T -d /storage3/artem/MGNC_Dec24/Ch-R1 -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  84,409
 Normal Paired: 44,447 (52.66%)
 Chimeric Paired: 32,487 (38.49%)
 Chimeric Ambiguous: 6,423 (7.61%)
 Unmapped: 1,052 (1.25%)
 Ligation Motif Present: 71,928 (85.21%)
Alignable (Normal+Chimeric Paired): 76,934 (91.14%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-12-22T23:54:46,728]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 75,079 (88.95%)
PCR Duplicates: 363 (0.43%)
Optical Duplicates: 1,492 (1.77%)
Library Complexity Estimate: 7,814,357
Intra-fragment Reads: 3,814 (4.52% / 5.08%)
Below MAPQ Threshold: 12,205 (14.46% / 16.26%)
Hi-C Contacts: 62,874 (74.49% / 83.74%)
 Ligation Motif Present: 52,529  (62.23% / 69.96%)
 3' Bias (Long Range): 78% - 22%
 Pair Type intra chrom %(L-I-O-R): 10% - 69% - 10% - 11%
 Pair Type inter chrom %(L-I-O-R): 23% - 25% - 25% - 26%
 DE: 55%
 Cis/all (FF and RR orient): 88.1%
Inter-chromosomal: 3,377  (4.00% / 4.50%)
Intra-chromosomal: 59,497  (70.49% / 79.25%)
Short Range (<20,000bp): 42,273  (50.08% / 56.30%)
Long Range (>20,000bp): 17,224  (20.41% / 22.94%)