Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.13" 2024-10-15; juicer.sh -g T2T -d /storage3/artem/MGNC_Dec24/Ch-R2 -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  131,274
 Normal Paired: 76,689 (58.42%)
 Chimeric Paired: 43,095 (32.83%)
 Chimeric Ambiguous: 8,882 (6.77%)
 Unmapped: 2,608 (1.99%)
 Ligation Motif Present: 112,557 (85.74%)
Alignable (Normal+Chimeric Paired): 119,784 (91.25%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-12-22T23:55:47,465]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 116,965 (89.10%)
PCR Duplicates: 669 (0.51%)
Optical Duplicates: 2,150 (1.64%)
Library Complexity Estimate: 10,302,872
Intra-fragment Reads: 3,790 (2.89% / 3.24%)
Below MAPQ Threshold: 20,437 (15.57% / 17.47%)
Hi-C Contacts: 96,528 (73.53% / 82.53%)
 Ligation Motif Present: 81,378  (61.99% / 69.57%)
 3' Bias (Long Range): 84% - 16%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 26% - 25% - 24%
 DE: 65%
 Cis/all (FF and RR orient): 87.0%
Inter-chromosomal: 4,439  (3.38% / 3.80%)
Intra-chromosomal: 92,089  (70.15% / 78.73%)
Short Range (<20,000bp): 70,711  (53.87% / 60.45%)
Long Range (>20,000bp): 21,378  (16.29% / 18.28%)