Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.13" 2024-10-15; juicer.sh -g T2T -d /storage3/artem/MGNC_Dec24/Ch-aux-R1 -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  88,244
 Normal Paired: 53,773 (60.94%)
 Chimeric Paired: 26,243 (29.74%)
 Chimeric Ambiguous: 6,020 (6.82%)
 Unmapped: 2,208 (2.50%)
 Ligation Motif Present: 67,843 (76.88%)
Alignable (Normal+Chimeric Paired): 80,016 (90.68%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-12-22T23:52:29,519]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 78,185 (88.60%)
PCR Duplicates: 408 (0.46%)
Optical Duplicates: 1,423 (1.61%)
Library Complexity Estimate: 7,543,460
Intra-fragment Reads: 8,442 (9.57% / 10.80%)
Below MAPQ Threshold: 13,566 (15.37% / 17.35%)
Hi-C Contacts: 64,619 (73.23% / 82.65%)
 Ligation Motif Present: 48,176  (54.59% / 61.62%)
 3' Bias (Long Range): 81% - 19%
 Pair Type intra chrom %(L-I-O-R): 6% - 81% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 26% - 24% - 25% - 25%
 DE: 71%
 Cis/all (FF and RR orient): 82.5%
Inter-chromosomal: 3,241  (3.67% / 4.15%)
Intra-chromosomal: 61,378  (69.55% / 78.50%)
Short Range (<20,000bp): 50,435  (57.15% / 64.51%)
Long Range (>20,000bp): 10,943  (12.40% / 14.00%)