Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.13" 2024-10-15; juicer.sh -g T2T -d /storage3/artem/MGNC_Dec24/Ch-aux-R2 -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  127,152
 Normal Paired: 74,963 (58.96%)
 Chimeric Paired: 39,609 (31.15%)
 Chimeric Ambiguous: 9,188 (7.23%)
 Unmapped: 3,392 (2.67%)
 Ligation Motif Present: 109,016 (85.74%)
Alignable (Normal+Chimeric Paired): 114,572 (90.11%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-12-22T23:53:43,530]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 112,109 (88.17%)
PCR Duplicates: 600 (0.47%)
Optical Duplicates: 1,863 (1.47%)
Library Complexity Estimate: 10,548,495
Intra-fragment Reads: 4,421 (3.48% / 3.94%)
Below MAPQ Threshold: 20,582 (16.19% / 18.36%)
Hi-C Contacts: 91,527 (71.98% / 81.64%)
 Ligation Motif Present: 77,068  (60.61% / 68.74%)
 3' Bias (Long Range): 84% - 16%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 24% - 25% - 25% - 26%
 DE: 67%
 Cis/all (FF and RR orient): 75.8%
Inter-chromosomal: 7,322  (5.76% / 6.53%)
Intra-chromosomal: 84,205  (66.22% / 75.11%)
Short Range (<20,000bp): 67,556  (53.13% / 60.26%)
Long Range (>20,000bp): 16,649  (13.09% / 14.85%)