Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.13" 2024-10-15; juicer.sh -g T2T -d /storage3/artem/MGNC_Dec24/hsRAD-R1 -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  81,642
 Normal Paired: 48,856 (59.84%)
 Chimeric Paired: 26,827 (32.86%)
 Chimeric Ambiguous: 5,114 (6.26%)
 Unmapped: 845 (1.04%)
 Ligation Motif Present: 45,353 (55.55%)
Alignable (Normal+Chimeric Paired): 75,683 (92.70%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-12-22T23:58:30,975]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 73,793 (90.39%)
PCR Duplicates: 304 (0.37%)
Optical Duplicates: 1,586 (1.94%)
Library Complexity Estimate: 9,005,490
Intra-fragment Reads: 9,776 (11.97% / 13.25%)
Below MAPQ Threshold: 10,877 (13.32% / 14.74%)
Hi-C Contacts: 62,916 (77.06% / 85.26%)
 Ligation Motif Present: 33,242  (40.72% / 45.05%)
 3' Bias (Long Range): 71% - 29%
 Pair Type intra chrom %(L-I-O-R): 9% - 75% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 26% - 23% - 26%
 DE: 64%
 Cis/all (FF and RR orient): 90.2%
Inter-chromosomal: 2,180  (2.67% / 2.95%)
Intra-chromosomal: 60,736  (74.39% / 82.31%)
Short Range (<20,000bp): 46,826  (57.36% / 63.46%)
Long Range (>20,000bp): 13,910  (17.04% / 18.85%)