Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.13" 2024-10-15; juicer.sh -g T2T -d /storage3/artem/MGNC_Dec24/hsRAD-R2 -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  118,623
 Normal Paired: 72,921 (61.47%)
 Chimeric Paired: 35,145 (29.63%)
 Chimeric Ambiguous: 7,439 (6.27%)
 Unmapped: 3,118 (2.63%)
 Ligation Motif Present: 78,347 (66.05%)
Alignable (Normal+Chimeric Paired): 108,066 (91.10%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-12-22T23:59:27,428]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 105,543 (88.97%)
PCR Duplicates: 585 (0.49%)
Optical Duplicates: 1,938 (1.63%)
Library Complexity Estimate: 9,591,217
Intra-fragment Reads: 19,251 (16.23% / 18.24%)
Below MAPQ Threshold: 16,088 (13.56% / 15.24%)
Hi-C Contacts: 89,455 (75.41% / 84.76%)
 Ligation Motif Present: 56,705  (47.80% / 53.73%)
 3' Bias (Long Range): 75% - 25%
 Pair Type intra chrom %(L-I-O-R): 7% - 81% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 26% - 24%
 DE: 72%
 Cis/all (FF and RR orient): 90.4%
Inter-chromosomal: 2,437  (2.05% / 2.31%)
Intra-chromosomal: 87,018  (73.36% / 82.45%)
Short Range (<20,000bp): 71,356  (60.15% / 67.61%)
Long Range (>20,000bp): 15,662  (13.20% / 14.84%)