Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.14" 2025-01-21; juicer.sh -g T2T -d /storage3/artem/MGNC_Feb2025/E14K-R1 -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  1,366,834
 Normal Paired: 772,735 (56.53%)
 Chimeric Paired: 510,729 (37.37%)
 Chimeric Ambiguous: 79,416 (5.81%)
 Unmapped: 3,954 (0.29%)
 Ligation Motif Present: 76,343 (5.59%)
Alignable (Normal+Chimeric Paired): 1,283,464 (93.90%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-02-19T02:42:07,310]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 1,262,113 (92.34%)
PCR Duplicates: 6,105 (0.45%)
Optical Duplicates: 15,246 (1.12%)
Library Complexity Estimate: 131,303,120
Intra-fragment Reads: 157,472 (11.52% / 12.48%)
Below MAPQ Threshold: 557,388 (40.78% / 44.16%)
Hi-C Contacts: 704,725 (51.56% / 55.84%)
 Ligation Motif Present: 33,950  (2.48% / 2.69%)
 3' Bias (Long Range): 54% - 46%
 Pair Type intra chrom %(L-I-O-R): 1% - 97% - 1% - 1%
 Pair Type inter chrom %(L-I-O-R): 26% - 24% - 25% - 25%
 DE: 94%
 Cis/all (FF and RR orient): 74.6%
Inter-chromosomal: 10,777  (0.79% / 0.85%)
Intra-chromosomal: 693,948  (50.77% / 54.98%)
Short Range (<20,000bp): 671,326  (49.12% / 53.19%)
Long Range (>20,000bp): 22,622  (1.66% / 1.79%)