Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.14" 2025-01-21; juicer.sh -g T2T -d /storage3/artem/MGNC_Feb2025/E14K-aux-R1 -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  840,932
 Normal Paired: 472,032 (56.13%)
 Chimeric Paired: 315,517 (37.52%)
 Chimeric Ambiguous: 48,288 (5.74%)
 Unmapped: 5,095 (0.61%)
 Ligation Motif Present: 35,175 (4.18%)
Alignable (Normal+Chimeric Paired): 787,549 (93.65%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-02-19T02:36:10,320]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 774,993 (92.16%)
PCR Duplicates: 3,512 (0.42%)
Optical Duplicates: 9,044 (1.08%)
Library Complexity Estimate: 86,025,899
Intra-fragment Reads: 121,295 (14.42% / 15.65%)
Below MAPQ Threshold: 340,445 (40.48% / 43.93%)
Hi-C Contacts: 434,548 (51.67% / 56.07%)
 Ligation Motif Present: 15,826  (1.88% / 2.04%)
 3' Bias (Long Range): 52% - 48%
 Pair Type intra chrom %(L-I-O-R): 1% - 97% - 1% - 1%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 93%
 Cis/all (FF and RR orient): 56.0%
Inter-chromosomal: 13,310  (1.58% / 1.72%)
Intra-chromosomal: 421,238  (50.09% / 54.35%)
Short Range (<20,000bp): 410,262  (48.79% / 52.94%)
Long Range (>20,000bp): 10,976  (1.31% / 1.42%)