Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g b.floridae -y /data/aapopov/Projects/HumanDros/Branchiostoma_Hi_C/B.floridae/B.floridae.fna_MboI.txt -d /data/aapopov/Projects/HumanDros/Branchiostoma_Hi_C/B.floridae_HIC -s MboI -p /data/aapopov/Projects/HumanDros/Branchiostoma_Hi_C/B.floridae/B.floridae.fna.chrom.sizes -z /data/aapopov/Projects/HumanDros/Branchiostoma_Hi_C/B.floridae/B.floridae.fna -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  128,214,144
 Normal Paired: 62,806,757 (48.99%)
 Chimeric Paired: 29,117,489 (22.71%)
 Chimeric Ambiguous: 16,896,181 (13.18%)
 Unmapped: 19,393,717 (15.13%)
 Ligation Motif Present: 85,437,275 (66.64%)
Alignable (Normal+Chimeric Paired): 91,924,246 (71.70%)
WARN [2024-06-25T16:05:18,578]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 78,873,053 (61.52%)
PCR Duplicates: 13,051,193 (10.18%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 292,300,567
Intra-fragment Reads: 6,140,836 (4.79% / 7.79%)
Below MAPQ Threshold: 33,086,379 (25.81% / 41.95%)
Hi-C Contacts: 39,645,838 (30.92% / 50.27%)
 Ligation Motif Present: 28,715,649  (22.40% / 36.41%)
 3' Bias (Long Range): 68% - 32%
 Pair Type intra chrom %(L-I-O-R): 14% - 57% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 27%
 Cis/all (FF and RR orient): 49.7%
Inter-chromosomal: 14,493,677  (11.30% / 18.38%)
Intra-chromosomal: 25,152,161  (19.62% / 31.89%)
Short Range (<20,000bp): 14,186,266  (11.06% / 17.99%)
Long Range (>20,000bp): 10,965,895  (8.55% / 13.90%)