Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/18_01_24_BGI_hi_c_CTCF/CTCF_aux_BGI_18_01/cherry_R2/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  25,489,547
 Normal Paired: 11,508,959 (45.15%)
 Chimeric Paired: 10,906,602 (42.79%)
 Chimeric Ambiguous: 2,962,568 (11.62%)
 Unmapped: 111,418 (0.44%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 22,415,561 (87.94%)
WARN [2024-01-23T00:43:13,048]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 22,105,575 (86.72%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 309,986 (1.22%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,963,731 (7.70% / 8.88%)
Hi-C Contacts: 20,141,844 (79.02% / 91.12%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 69% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 49%
 Cis/all (FF and RR orient): 69.3%
Inter-chromosomal: 3,145,449  (12.34% / 14.23%)
Intra-chromosomal: 16,996,395  (66.68% / 76.89%)
Short Range (<20,000bp): 11,743,141  (46.07% / 53.12%)
Long Range (>20,000bp): 5,253,254  (20.61% / 23.76%)