Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/18_01_24_BGI_hi_c_CTCF/CTCF_aux_BGI_18_01/hCTCF_R2/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  20,452,060
 Normal Paired: 9,041,755 (44.21%)
 Chimeric Paired: 8,973,670 (43.88%)
 Chimeric Ambiguous: 2,304,953 (11.27%)
 Unmapped: 131,682 (0.64%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 18,015,425 (88.09%)
WARN [2024-01-23T02:42:08,843]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 17,807,208 (87.07%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 208,217 (1.02%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,632,480 (7.98% / 9.17%)
Hi-C Contacts: 16,174,728 (79.09% / 90.83%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 66% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 45%
 Cis/all (FF and RR orient): 66.7%
Inter-chromosomal: 2,987,432  (14.61% / 16.78%)
Intra-chromosomal: 13,187,296  (64.48% / 74.06%)
Short Range (<20,000bp): 8,348,475  (40.82% / 46.88%)
Long Range (>20,000bp): 4,838,821  (23.66% / 27.17%)