Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/18_01_24_BGI_hi_c_CTCF/CTCF_aux_BGI_18_01/zfCTCF/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  21,542,835
 Normal Paired: 9,295,044 (43.15%)
 Chimeric Paired: 9,723,629 (45.14%)
 Chimeric Ambiguous: 2,401,892 (11.15%)
 Unmapped: 122,270 (0.57%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 19,018,673 (88.28%)
WARN [2024-01-23T03:47:37,293]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 18,756,463 (87.07%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 262,210 (1.22%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,739,784 (8.08% / 9.28%)
Hi-C Contacts: 17,016,679 (78.99% / 90.72%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 67% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 47%
 Cis/all (FF and RR orient): 68.1%
Inter-chromosomal: 2,887,879  (13.41% / 15.40%)
Intra-chromosomal: 14,128,800  (65.58% / 75.33%)
Short Range (<20,000bp): 9,141,874  (42.44% / 48.74%)
Long Range (>20,000bp): 4,986,926  (23.15% / 26.59%)