Experiment description: Ch_a
Sequenced Read Pairs:  5,247,359
 Normal Paired: 4,940,398 (94.15%)
 Chimeric Paired: 51,766 (0.99%)
 Chimeric Ambiguous: 45,763 (0.87%)
 Unmapped: 209,432 (3.99%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 4,992,164 (95.14%)
Unique Reads: 4,769,382 (90.89%)
PCR Duplicates: 205,079 (3.91%)
Optical Duplicates: 17,703 (0.34%)
Library Complexity Estimate: 58,661,244
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,661,760 (31.67% / 34.84%)
Hi-C Contacts: 3,107,622 (59.22% / 65.16%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 14% - 57% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 38%
 Cis/all (FF and RR orient): 81.9%
Inter-chromosomal: 350,938  (6.69% / 7.36%)
Intra-chromosomal: 2,756,684  (52.53% / 57.80%)
Short Range (<20,000bp): 1,599,630  (30.48% / 33.54%)
Long Range (>20,000bp): 1,157,054  (22.05% / 24.26%)