Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.8.1" 2023-08-24; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage3/calengil/forArtem/718 -s none -p /storage2/artemS/hg38/chromsizes/hg38.chrom.sizes -g hg38 -z /storage2/artemS/hg38/hg38.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  167,099
 Normal Paired: 128,609 (76.97%)
 Chimeric Paired: 26,731 (16.00%)
 Chimeric Ambiguous: 9,798 (5.86%)
 Unmapped: 1,961 (1.17%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 155,340 (92.96%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-09-17T12:02:15,326]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 137,180 (82.10%)
PCR Duplicates: 16,397 (9.81%)
Optical Duplicates: 1,763 (1.06%)
Library Complexity Estimate: 667,054
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 29,025 (17.37% / 21.16%)
Hi-C Contacts: 108,155 (64.73% / 78.84%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 55%
 Cis/all (FF and RR orient): 53.5%
Inter-chromosomal: 22,638  (13.55% / 16.50%)
Intra-chromosomal: 85,517  (51.18% / 62.34%)
Short Range (<20,000bp): 65,717  (39.33% / 47.91%)
Long Range (>20,000bp): 19,800  (11.85% / 14.43%)