Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.8.1" 2023-08-24; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage3/calengil/forArtem/718_a -s none -p /storage2/artemS/hg38/chromsizes/hg38.chrom.sizes -g hg38 -z /storage2/artemS/hg38/hg38.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  102,030
 Normal Paired: 74,891 (73.40%)
 Chimeric Paired: 18,431 (18.06%)
 Chimeric Ambiguous: 7,223 (7.08%)
 Unmapped: 1,485 (1.46%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 93,322 (91.47%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-09-17T12:02:59,292]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 83,423 (81.76%)
PCR Duplicates: 8,762 (8.59%)
Optical Duplicates: 1,137 (1.11%)
Library Complexity Estimate: 453,697
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 17,751 (17.40% / 21.28%)
Hi-C Contacts: 65,672 (64.37% / 78.72%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 67% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 25%
 DE: 45%
 Cis/all (FF and RR orient): 63.9%
Inter-chromosomal: 12,921  (12.66% / 15.49%)
Intra-chromosomal: 52,751  (51.70% / 63.23%)
Short Range (<20,000bp): 36,424  (35.70% / 43.66%)
Long Range (>20,000bp): 16,327  (16.00% / 19.57%)