Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.8.1" 2023-08-24; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage3/calengil/forArtem/Ch -s none -p /storage2/artemS/hg38/chromsizes/hg38.chrom.sizes -g hg38 -z /storage2/artemS/hg38/hg38.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  163,238
 Normal Paired: 106,998 (65.55%)
 Chimeric Paired: 39,335 (24.10%)
 Chimeric Ambiguous: 15,015 (9.20%)
 Unmapped: 1,890 (1.16%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 146,333 (89.64%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-09-17T12:04:26,106]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 130,752 (80.10%)
PCR Duplicates: 13,967 (8.56%)
Optical Duplicates: 1,614 (0.99%)
Library Complexity Estimate: 700,694
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 27,012 (16.55% / 20.66%)
Hi-C Contacts: 103,740 (63.55% / 79.34%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 13% - 62% - 12% - 13%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 25%
 DE: 43%
 Cis/all (FF and RR orient): 76.5%
Inter-chromosomal: 13,823  (8.47% / 10.57%)
Intra-chromosomal: 89,917  (55.08% / 68.77%)
Short Range (<20,000bp): 55,821  (34.20% / 42.69%)
Long Range (>20,000bp): 34,096  (20.89% / 26.08%)