Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.8.1" 2023-08-24; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage3/calengil/forArtem/Ch_a -s none -p /storage2/artemS/hg38/chromsizes/hg38.chrom.sizes -g hg38 -z /storage2/artemS/hg38/hg38.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  149,462
 Normal Paired: 92,567 (61.93%)
 Chimeric Paired: 40,506 (27.10%)
 Chimeric Ambiguous: 14,601 (9.77%)
 Unmapped: 1,788 (1.20%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 133,073 (89.03%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-09-17T12:05:58,370]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 117,803 (78.82%)
PCR Duplicates: 13,614 (9.11%)
Optical Duplicates: 1,656 (1.11%)
Library Complexity Estimate: 589,682
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 24,509 (16.40% / 20.81%)
Hi-C Contacts: 93,294 (62.42% / 79.19%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 13% - 61% - 13% - 13%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 43%
 Cis/all (FF and RR orient): 81.8%
Inter-chromosomal: 9,632  (6.44% / 8.18%)
Intra-chromosomal: 83,662  (55.98% / 71.02%)
Short Range (<20,000bp): 51,918  (34.74% / 44.07%)
Long Range (>20,000bp): 31,744  (21.24% / 26.95%)