Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/Zapusk_Sirius_Human_Dros/718/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  25,416,331
 Normal Paired: 18,453,078 (72.60%)
 Chimeric Paired: 4,885,297 (19.22%)
 Chimeric Ambiguous: 1,538,210 (6.05%)
 Unmapped: 539,746 (2.12%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 23,338,375 (91.82%)
WARN [2023-12-12T00:16:59,548]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 16,867,265 (66.36%)
PCR Duplicates: 5,582,534 (21.96%)
Optical Duplicates: 888,576 (3.50%)
Library Complexity Estimate: 37,297,293
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,393,272 (13.35% / 20.12%)
Hi-C Contacts: 13,473,993 (53.01% / 79.88%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 69% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 43%
 Cis/all (FF and RR orient): 53.7%
Inter-chromosomal: 3,544,185  (13.94% / 21.01%)
Intra-chromosomal: 9,929,808  (39.07% / 58.87%)
Short Range (<20,000bp): 6,827,928  (26.86% / 40.48%)
Long Range (>20,000bp): 3,101,880  (12.20% / 18.39%)