Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/Zapusk_Sirius_Human_Dros/718_a/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  16,448,275
 Normal Paired: 10,949,810 (66.57%)
 Chimeric Paired: 3,786,509 (23.02%)
 Chimeric Ambiguous: 1,300,241 (7.91%)
 Unmapped: 411,715 (2.50%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 14,736,319 (89.59%)
WARN [2023-12-12T00:54:41,411]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 11,882,620 (72.24%)
PCR Duplicates: 2,515,421 (15.29%)
Optical Duplicates: 338,278 (2.06%)
Library Complexity Estimate: 36,252,681
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,309,238 (7.96% / 11.02%)
Hi-C Contacts: 10,573,382 (64.28% / 88.98%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 12% - 63% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 39%
 Cis/all (FF and RR orient): 63.0%
Inter-chromosomal: 2,379,724  (14.47% / 20.03%)
Intra-chromosomal: 8,193,658  (49.81% / 68.95%)
Short Range (<20,000bp): 5,321,455  (32.35% / 44.78%)
Long Range (>20,000bp): 2,872,203  (17.46% / 24.17%)