Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /home/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/Ch -s none -p /home/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /home/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20 -S final                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  13,390,726
 Normal Paired: 8,920,496 (66.62%)
 Chimeric Paired: 3,205,107 (23.94%)
 Chimeric Ambiguous: 1,052,160 (7.86%)
 Unmapped: 212,963 (1.59%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 12,125,603 (90.55%)
WARN [2023-11-02T20:06:56,190]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 11,753,724 (87.78%)
PCR Duplicates: 140,403 (1.05%)
Optical Duplicates: 231,476 (1.73%)
Library Complexity Estimate: 499,828,133
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,267,660 (16.93% / 19.29%)
Hi-C Contacts: 9,486,064 (70.84% / 80.71%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 13% - 61% - 13% - 13%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 41%
 Cis/all (FF and RR orient): 76.3%
Inter-chromosomal: 1,322,477  (9.88% / 11.25%)
Intra-chromosomal: 8,163,587  (60.96% / 69.46%)
Short Range (<20,000bp): 4,953,053  (36.99% / 42.14%)
Long Range (>20,000bp): 3,210,534  (23.98% / 27.32%)