Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/Zapusk_Sirius_Human_Dros/Ch_a/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  21,089,999
 Normal Paired: 13,413,612 (63.60%)
 Chimeric Paired: 5,553,393 (26.33%)
 Chimeric Ambiguous: 1,779,600 (8.44%)
 Unmapped: 343,394 (1.63%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 18,967,005 (89.93%)
WARN [2023-12-12T01:35:17,966]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 17,552,930 (83.23%)
PCR Duplicates: 1,111,875 (5.27%)
Optical Duplicates: 302,200 (1.43%)
Library Complexity Estimate: 150,375,604
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,520,907 (16.69% / 20.06%)
Hi-C Contacts: 14,032,023 (66.53% / 79.94%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 14% - 59% - 13% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 41%
 Cis/all (FF and RR orient): 81.7%
Inter-chromosomal: 1,511,779  (7.17% / 8.61%)
Intra-chromosomal: 12,520,244  (59.37% / 71.33%)
Short Range (<20,000bp): 7,567,268  (35.88% / 43.11%)
Long Range (>20,000bp): 4,952,976  (23.48% / 28.22%)