Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/Zapusk_Sirius_Human_Dros/718/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  14,590,962
 Normal Paired: 10,138,289 (69.48%)
 Chimeric Paired: 3,193,330 (21.89%)
 Chimeric Ambiguous: 1,026,469 (7.03%)
 Unmapped: 232,874 (1.60%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 13,331,619 (91.37%)
WARN [2023-12-10T14:04:24,040]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 9,217,185 (63.17%)
PCR Duplicates: 3,927,507 (26.92%)
Optical Duplicates: 186,927 (1.28%)
Library Complexity Estimate: 17,353,061
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,535,817 (10.53% / 16.66%)
Hi-C Contacts: 7,681,368 (52.64% / 83.34%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 72% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 47%
 Cis/all (FF and RR orient): 53.6%
Inter-chromosomal: 1,887,248  (12.93% / 20.48%)
Intra-chromosomal: 5,794,120  (39.71% / 62.86%)
Short Range (<20,000bp): 4,148,578  (28.43% / 45.01%)
Long Range (>20,000bp): 1,645,542  (11.28% / 17.85%)