Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/Zapusk_Sirius_Human_Dros/718/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  14,590,962
 Normal Paired: 10,138,289 (69.48%)
 Chimeric Paired: 3,193,330 (21.89%)
 Chimeric Ambiguous: 1,026,469 (7.03%)
 Unmapped: 232,874 (1.60%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 13,331,619 (91.37%)
WARN [2023-12-10T14:04:24,040]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 9,217,185 (63.17%)
PCR Duplicates: 3,927,507 (26.92%)
Optical Duplicates: 186,927 (1.28%)
Library Complexity Estimate: 17,353,061
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,008,863 (6.91% / 10.95%)
Hi-C Contacts: 8,208,322 (56.26% / 89.05%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 71% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 46%
 Cis/all (FF and RR orient): 52.6%
Inter-chromosomal: 2,110,515  (14.46% / 22.90%)
Intra-chromosomal: 6,097,807  (41.79% / 66.16%)
Short Range (<20,000bp): 4,329,035  (29.67% / 46.97%)
Long Range (>20,000bp): 1,768,772  (12.12% / 19.19%)