Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/Zapusk_Sirius_Human_Dros/Ch_a/ -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  4,948,750
 Normal Paired: 2,655,034 (53.65%)
 Chimeric Paired: 1,648,566 (33.31%)
 Chimeric Ambiguous: 560,261 (11.32%)
 Unmapped: 84,889 (1.72%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 4,303,600 (86.96%)
WARN [2023-12-10T14:45:39,813]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 3,355,883 (67.81%)
PCR Duplicates: 874,579 (17.67%)
Optical Duplicates: 73,138 (1.48%)
Library Complexity Estimate: 8,766,698
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 369,569 (7.47% / 11.01%)
Hi-C Contacts: 2,986,314 (60.34% / 88.99%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 14% - 59% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 40%
 Cis/all (FF and RR orient): 80.5%
Inter-chromosomal: 350,261  (7.08% / 10.44%)
Intra-chromosomal: 2,636,053  (53.27% / 78.55%)
Short Range (<20,000bp): 1,574,265  (31.81% / 46.91%)
Long Range (>20,000bp): 1,061,788  (21.46% / 31.64%)