Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/Extract/Hi_C/AUX -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  5,170,430
 Normal Paired: 3,754,510 (72.62%)
 Chimeric Paired: 943,683 (18.25%)
 Chimeric Ambiguous: 360,050 (6.96%)
 Unmapped: 112,187 (2.17%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 4,698,193 (90.87%)
WARN [2024-11-21T08:50:00,752]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 4,385,514 (84.82%)
PCR Duplicates: 294,668 (5.70%)
Optical Duplicates: 18,011 (0.35%)
Library Complexity Estimate: 35,590,423
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 910,302 (17.61% / 20.76%)
Hi-C Contacts: 3,475,212 (67.21% / 79.24%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 13% - 61% - 13% - 13%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 42%
 Cis/all (FF and RR orient): 78.9%
Inter-chromosomal: 426,681  (8.25% / 9.73%)
Intra-chromosomal: 3,048,531  (58.96% / 69.51%)
Short Range (<20,000bp): 1,779,676  (34.42% / 40.58%)
Long Range (>20,000bp): 1,268,855  (24.54% / 28.93%)