Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/Extract/Hi_C/AUX_e -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  7,118,814
 Normal Paired: 4,966,323 (69.76%)
 Chimeric Paired: 1,360,936 (19.12%)
 Chimeric Ambiguous: 531,892 (7.47%)
 Unmapped: 259,663 (3.65%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 6,327,259 (88.88%)
WARN [2024-11-21T08:38:10,832]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 5,873,766 (82.51%)
PCR Duplicates: 426,508 (5.99%)
Optical Duplicates: 26,985 (0.38%)
Library Complexity Estimate: 44,408,386
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,205,730 (16.94% / 20.53%)
Hi-C Contacts: 4,668,036 (65.57% / 79.47%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 13% - 60% - 13% - 13%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 40%
 Cis/all (FF and RR orient): 77.4%
Inter-chromosomal: 635,921  (8.93% / 10.83%)
Intra-chromosomal: 4,032,115  (56.64% / 68.65%)
Short Range (<20,000bp): 2,280,447  (32.03% / 38.82%)
Long Range (>20,000bp): 1,751,668  (24.61% / 29.82%)