Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/Extract/Hi_C/AUX_e -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  7,118,814
 Normal Paired: 4,966,323 (69.76%)
 Chimeric Paired: 1,360,936 (19.12%)
 Chimeric Ambiguous: 531,892 (7.47%)
 Unmapped: 259,663 (3.65%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 6,327,259 (88.88%)
WARN [2024-11-21T08:38:10,832]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 5,873,766 (82.51%)
PCR Duplicates: 426,508 (5.99%)
Optical Duplicates: 26,985 (0.38%)
Library Complexity Estimate: 44,408,386
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 759,464 (10.67% / 12.93%)
Hi-C Contacts: 5,114,302 (71.84% / 87.07%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 14% - 59% - 13% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 39%
 Cis/all (FF and RR orient): 76.2%
Inter-chromosomal: 744,622  (10.46% / 12.68%)
Intra-chromosomal: 4,369,680  (61.38% / 74.39%)
Short Range (<20,000bp): 2,447,308  (34.38% / 41.67%)
Long Range (>20,000bp): 1,922,372  (27.00% / 32.73%)