Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/Extract/Hi_C/gDNA -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  67,990,310
 Normal Paired: 47,658,684 (70.10%)
 Chimeric Paired: 10,089,141 (14.84%)
 Chimeric Ambiguous: 1,397,657 (2.06%)
 Unmapped: 8,844,828 (13.01%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 57,747,825 (84.94%)
WARN [2024-11-21T08:06:07,484]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 52,944,889 (77.87%)
PCR Duplicates: 4,544,292 (6.68%)
Optical Duplicates: 258,644 (0.38%)
Library Complexity Estimate: 344,216,898
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 6,413,739 (9.43% / 12.11%)
Hi-C Contacts: 46,531,150 (68.44% / 87.89%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 85% - 1% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 62%
 Cis/all (FF and RR orient): 66.0%
Inter-chromosomal: 5,966,896  (8.78% / 11.27%)
Intra-chromosomal: 40,564,254  (59.66% / 76.62%)
Short Range (<20,000bp): 40,205,104  (59.13% / 75.94%)
Long Range (>20,000bp): 359,150  (0.53% / 0.68%)