Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g hg38 -d /data/aapopov/Projects/HumanDros/Extract/Hi_C/gDNAandEXTR -s none -p /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.chrom.sizes -z /data/aapopov/Projects/HumanDros/CTCF_Aux_data_for_juicer/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  28,823,540
 Normal Paired: 16,582,432 (57.53%)
 Chimeric Paired: 3,280,146 (11.38%)
 Chimeric Ambiguous: 536,170 (1.86%)
 Unmapped: 8,424,792 (29.23%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 19,862,578 (68.91%)
WARN [2024-11-21T06:45:05,942]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 18,476,984 (64.10%)
PCR Duplicates: 1,301,839 (4.52%)
Optical Duplicates: 83,755 (0.29%)
Library Complexity Estimate: 143,581,778
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,372,687 (11.70% / 18.25%)
Hi-C Contacts: 15,104,297 (52.40% / 81.75%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 85% - 0% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 62%
 Cis/all (FF and RR orient): 67.0%
Inter-chromosomal: 1,879,793  (6.52% / 10.17%)
Intra-chromosomal: 13,224,504  (45.88% / 71.57%)
Short Range (<20,000bp): 13,117,783  (45.51% / 71.00%)
Long Range (>20,000bp): 106,721  (0.37% / 0.58%)