Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.12" 2024-07-16; juicer.sh -g T2T -d /storage3/artem/MG_1508/AUX-e/ -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  35,402
 Normal Paired: 18,184 (51.36%)
 Chimeric Paired: 12,448 (35.16%)
 Chimeric Ambiguous: 3,883 (10.97%)
 Unmapped: 887 (2.51%)
 Ligation Motif Present: 28,376 (80.15%)
Alignable (Normal+Chimeric Paired): 30,632 (86.53%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-19T16:49:29,433]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 30,620 (86.49%)
PCR Duplicates: 7 (0.02%)
Optical Duplicates: 5 (0.01%)
Library Complexity Estimate: 66,990,728
Intra-fragment Reads: 1,231 (3.48% / 4.02%)
Below MAPQ Threshold: 5,085 (14.36% / 16.61%)
Hi-C Contacts: 25,535 (72.13% / 83.39%)
 Ligation Motif Present: 19,859  (56.10% / 64.86%)
 3' Bias (Long Range): 73% - 27%
 Pair Type intra chrom %(L-I-O-R): 12% - 65% - 11% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 26%
 DE: 46%
 Cis/all (FF and RR orient): 78.8%
Inter-chromosomal: 2,905  (8.21% / 9.49%)
Intra-chromosomal: 22,630  (63.92% / 73.91%)
Short Range (<20,000bp): 14,057  (39.71% / 45.91%)
Long Range (>20,000bp): 8,573  (24.22% / 28.00%)