Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.12" 2024-07-16; juicer.sh -g T2T -d /storage3/artem/MG_1508/AUX/ -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/ Sequenced Read Pairs: 21,710 Normal Paired: 11,886 (54.75%) Chimeric Paired: 7,350 (33.86%) Chimeric Ambiguous: 2,239 (10.31%) Unmapped: 235 (1.08%) Ligation Motif Present: 17,041 (78.49%) Alignable (Normal+Chimeric Paired): 19,236 (88.60%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2024-08-19T16:48:33,889] [Globals.java:138] [main] Development mode is enabled Unique Reads: 19,228 (88.57%) PCR Duplicates: 3 (0.01%) Optical Duplicates: 5 (0.02%) Library Complexity Estimate: 61,632,149 Intra-fragment Reads: 946 (4.36% / 4.92%) Below MAPQ Threshold: 3,162 (14.56% / 16.44%) Hi-C Contacts: 16,066 (74.00% / 83.56%) Ligation Motif Present: 12,055 (55.53% / 62.70%) 3' Bias (Long Range): 71% - 29% Pair Type intra chrom %(L-I-O-R): 11% - 67% - 11% - 11% Pair Type inter chrom %(L-I-O-R): 26% - 25% - 23% - 26% DE: 50% Cis/all (FF and RR orient): 78.5% Inter-chromosomal: 1,663 (7.66% / 8.65%) Intra-chromosomal: 14,403 (66.34% / 74.91%) Short Range (<20,000bp): 9,348 (43.06% / 48.62%) Long Range (>20,000bp): 5,055 (23.28% / 26.29%)