Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.12" 2024-07-16; juicer.sh -g T2T -d /storage3/artem/MG_1508/wo/ -s DpnII -p /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -y /storage3/artem/Genomes/T2T-CHM13v2.0/juicer.rs/T2T-CHM13v2.0_DpnII.txt -z /storage3/artem/Genomes/T2T-CHM13v2.0/hgT2T.fa -t 10 -D /storage2/dreamworld/Tools/juicer1.6_compact/                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  25,592
 Normal Paired: 12,407 (48.48%)
 Chimeric Paired: 9,631 (37.63%)
 Chimeric Ambiguous: 3,353 (13.10%)
 Unmapped: 201 (0.79%)
 Ligation Motif Present: 19,522 (76.28%)
Alignable (Normal+Chimeric Paired): 22,038 (86.11%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-19T16:50:40,548]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 22,027 (86.07%)
PCR Duplicates: 2 (0.01%)
Optical Duplicates: 9 (0.04%)
Library Complexity Estimate: 121,311,867
Intra-fragment Reads: 1,398 (5.46% / 6.35%)
Below MAPQ Threshold: 3,324 (12.99% / 15.09%)
Hi-C Contacts: 18,703 (73.08% / 84.91%)
 Ligation Motif Present: 13,462  (52.60% / 61.12%)
 3' Bias (Long Range): 68% - 32%
 Pair Type intra chrom %(L-I-O-R): 13% - 59% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 26% - 24% - 25% - 25%
 DE: 40%
 Cis/all (FF and RR orient): 77.1%
Inter-chromosomal: 2,555  (9.98% / 11.60%)
Intra-chromosomal: 16,148  (63.10% / 73.31%)
Short Range (<20,000bp): 9,064  (35.42% / 41.15%)
Long Range (>20,000bp): 7,084  (27.68% / 32.16%)