Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g Ascidia_mentula -d /data/aapopov/Projects/HumanDros/Obolochnik_HiC/ERR10297860 -y /data/aapopov/Projects/HumanDros/Obolochnik_HiC/Ascidia_mentula_genome/GCA_947561715.1_kaAscMent1.1_genomic.fna_Arima.txt -s Arima_v2 -p /data/aapopov/Projects/HumanDros/Obolochnik_HiC/Ascidia_mentula_genome/GCA_947561715.1_kaAscMent1.1_genomic.fna.chrom.sizes -z /data/aapopov/Projects/HumanDros/Obolochnik_HiC/Ascidia_mentula_genome/GCA_947561715.1_kaAscMent1.1_genomic.fna -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  358,577,707
 Normal Paired: 245,975,762 (68.60%)
 Chimeric Paired: 61,571,124 (17.17%)
 Chimeric Ambiguous: 37,724,435 (10.52%)
 Unmapped: 13,306,386 (3.71%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 307,546,886 (85.77%)
WARN [2024-07-18T00:10:05,565]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 251,160,569 (70.04%)
PCR Duplicates: 56,386,317 (15.72%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 732,725,884
Intra-fragment Reads: 2,106,172 (0.59% / 0.84%)
Below MAPQ Threshold: 79,871,204 (22.27% / 31.80%)
Hi-C Contacts: 169,183,193 (47.18% / 67.36%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 49% - 51%
 Pair Type intra chrom %(L-I-O-R): 12% - 65% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 43%
 Cis/all (FF and RR orient): 64.1%
Inter-chromosomal: 34,857,952  (9.72% / 13.88%)
Intra-chromosomal: 134,325,241  (37.46% / 53.48%)
Short Range (<20,000bp): 86,102,682  (24.01% / 34.28%)
Long Range (>20,000bp): 48,222,559  (13.45% / 19.20%)