Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g Ascidia_mentula -d /data/aapopov/Projects/HumanDros/Obolochnik_HiC/ERR10297860 -y /data/aapopov/Projects/HumanDros/Obolochnik_HiC/Ascidia_mentula_genome/GCA_947561715.1_kaAscMent1.1_genomic.fna_Arima.txt -s Arima_v2 -p /data/aapopov/Projects/HumanDros/Obolochnik_HiC/Ascidia_mentula_genome/GCA_947561715.1_kaAscMent1.1_genomic.fna.chrom.sizes -z /data/aapopov/Projects/HumanDros/Obolochnik_HiC/Ascidia_mentula_genome/GCA_947561715.1_kaAscMent1.1_genomic.fna -D /home/aapopov/tool/juicer1.6_compact-main -t 20 Sequenced Read Pairs: 358,577,707 Normal Paired: 245,975,762 (68.60%) Chimeric Paired: 61,571,124 (17.17%) Chimeric Ambiguous: 37,724,435 (10.52%) Unmapped: 13,306,386 (3.71%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 307,546,886 (85.77%) WARN [2024-07-18T00:10:05,565] [Globals.java:138] [main] Development mode is enabled Unique Reads: 251,160,569 (70.04%) PCR Duplicates: 56,386,317 (15.72%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 732,725,884 Intra-fragment Reads: 2,106,172 (0.59% / 0.84%) Below MAPQ Threshold: 79,871,204 (22.27% / 31.80%) Hi-C Contacts: 169,183,193 (47.18% / 67.36%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 49% - 51% Pair Type intra chrom %(L-I-O-R): 12% - 65% - 12% - 12% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 43% Cis/all (FF and RR orient): 64.1% Inter-chromosomal: 34,857,952 (9.72% / 13.88%) Intra-chromosomal: 134,325,241 (37.46% / 53.48%) Short Range (<20,000bp): 86,102,682 (24.01% / 34.28%) Long Range (>20,000bp): 48,222,559 (13.45% / 19.20%)