Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "1.8.0_152-release"; /home/aapopov/tool/juicer1.6_compact-main/scripts/juicer.sh -g Ascidia_mentula -d /data/aapopov/Projects/HumanDros/Obolochnik_HiC/ERR10297860 -y /data/aapopov/Projects/HumanDros/Obolochnik_HiC/Ascidia_mentula_genome/GCA_947561715.1_kaAscMent1.1_genomic.fna_Arima.txt -s Arima_v2 -p /data/aapopov/Projects/HumanDros/Obolochnik_HiC/Ascidia_mentula_genome/GCA_947561715.1_kaAscMent1.1_genomic.fna.chrom.sizes -z /data/aapopov/Projects/HumanDros/Obolochnik_HiC/Ascidia_mentula_genome/GCA_947561715.1_kaAscMent1.1_genomic.fna -D /home/aapopov/tool/juicer1.6_compact-main -t 20                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  358,577,707
 Normal Paired: 245,975,762 (68.60%)
 Chimeric Paired: 61,571,124 (17.17%)
 Chimeric Ambiguous: 37,724,435 (10.52%)
 Unmapped: 13,306,386 (3.71%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 307,546,886 (85.77%)
WARN [2024-07-18T00:10:05,565]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 251,160,569 (70.04%)
PCR Duplicates: 56,386,317 (15.72%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 732,725,884
Intra-fragment Reads: 2,106,172 (0.59% / 0.84%)
Below MAPQ Threshold: 106,303,021 (29.65% / 42.32%)
Hi-C Contacts: 142,751,376 (39.81% / 56.84%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 49% - 51%
 Pair Type intra chrom %(L-I-O-R): 11% - 67% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 45%
 Cis/all (FF and RR orient): 65.0%
Inter-chromosomal: 27,648,823  (7.71% / 11.01%)
Intra-chromosomal: 115,102,553  (32.10% / 45.83%)
Short Range (<20,000bp): 76,796,210  (21.42% / 30.58%)
Long Range (>20,000bp): 38,306,343  (10.68% / 15.25%)