rearrangement_ID rearrangement_type cell_type capture_WT_raw_data capture_Mut_raw_data cite genome_assembly chr start_capture end_capture start1 end1 start2 end2 start3 end3 start4 end4 start5 end5 start6 end6 comments path_to_processed_CTCF_data CTCF_raw_data CTCF_input Bor deletion E12.5 limb buds https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3179588 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3179590 Franke Martin et al. "Formation of new chromatin domains determines pathogenicity of genomic duplications." Nature 538.7624 (2016): 265-269. mm10 chr11 109140001 115015000 111522545 111540886 ./CTCF_data/CTCF_E125.narrowPeak SRX5259427-SRX5259428 SRX4096941 BorC1 deletion_2 E12.5 limb buds https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3179588 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8453401-SRR8453402 Franke Martin et al. "Formation of new chromatin domains determines pathogenicity of genomic duplications." Nature 538.7624 (2016): 265-269. mm10 chr11 109140001 115015000 111904229 111904329 111522535 111540879 ./CTCF_data/CTCF_E125.narrowPeak SRX5259427-SRX5259428 SRX4096953 BorC1-2 deletion_3 E12.5 limb buds https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3179588 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8453403-SRR8453404 Franke Martin et al. "Formation of new chromatin domains determines pathogenicity of genomic duplications." Nature 538.7624 (2016): 265-269. mm10 chr11 109140001 115015000 112209542 112209642 111522535 111540879 111653006 111653106 ./CTCF_data/CTCF_E125.narrowPeak SRX5259427-SRX5259428 SRX4096950 BorC1-4 deletion_5 E12.5 limb buds https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3179588 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8453405 Franke Martin et al. "Formation of new chromatin domains determines pathogenicity of genomic duplications." Nature 538.7624 (2016): 265-269. mm10 chr11 109140001 115015000 111522535 111540879 111514320 111653006 111653106 111904229 111904329 111964807 112103393 112103493 ./CTCF_data/CTCF_E125.narrowPeak SRX5259427-SRX5259428 SRX4096954 D3839 deletion_2 erythroid cells https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5453529-SRR5453530-SRR5453531-SRR5453514-SRR5453515-SRR5453516-SRR5453505-SRR5453506-SRR5453507 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5453532-SRR5453533-SRR5453534 Kragesteen Bjƒñrt K. et al. "Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis." Nature genetics 50.10 (2018): 1463-1473. mm10 chr11 32190000 32335000 32238646 32238667 32237202 32237228 _ del1-13d9lac_1 deletion_2 Distal Forelimb E12 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5855094-SRR5855095 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5855098-SRR5855099 Rodrƒ?guez-Carballo Eddie et al. "The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes." Genes & development 31.22 (2017): 2264-2281. mm10 chr2 70945000 81015000 74663890 74693921 74701834 74764314 ./CTCF_data/CTCF_DFL_E12.narrowPeak SRX3024492 SRX4096949 del1-13d9lac_2 deletion_2 Proximal Forelimb E12 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5855104-SRR5855105 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5855100-SRR5855101 Rodrƒ?guez-Carballo Eddie et al. "The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes." Genes & development 31.22 (2017): 2264-2281. mm10 chr2 70945000 81015000 74663890 74693921 74701834 74764314 ./CTCF_data/CTCF_PFL_E12.narrowPeak SRX3024493 SRX4096950 delattP-Rel5d9lac_1 deletion_2 Distal Forelimb E12 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5855094-SRR5855095 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5855102-SRR5855103 Rodrƒ?guez-Carballo Eddie et al. "The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes." Genes & development 31.22 (2017): 2264-2281. mm10 chr2 70945000 81015000 74422050 74693922 74701834 7468746 ./CTCF_data/CTCF_DFL_E12.narrowPeak SRX3024492 SRX4096951 delattP-Rel5d9lac_2 deletion_2 Proximal Forelimb E12 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5855104-SRR5855105 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5855104-SRR5855105 Rodrƒ?guez-Carballo Eddie et al. "The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes." Genes & development 31.22 (2017): 2264-2281. mm10 chr2 70945000 81015000 74422050 74693922 74701834 7468746 ./CTCF_data/CTCF_PFL_E12.narrowPeak SRX3024493 SRX4096952 DelB deletion human fibroblasts https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5099904 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5099905 Bianco Simona et al. "Polymer physics predicts the effects of structural variants on chromatin architecture." Nature genetics 50.5 (2018): 662-667. hg38 chr2 217445000 223235000 220413511 222149613 _ DelBs deletion E11.5 distal limb buds https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5099908 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5099910 Bianco Simona et al. "Polymer physics predicts the effects of structural variants on chromatin architecture." Nature genetics 50.5 (2018): 662-667. mm10 chr1 70945000 81010000 76392403 77862399 ./CTCF_data/CTCF_HL-E115.narrowPeak SRX1975285-SRX1975286 SRX4096939 DelL-Mm deletion Forelimb E11.5 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR6024957-SRR6024958-SRR6024959-SRR6024960 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR6024981-SRR6024982 Kragesteen Bjƒñrt K. et al. "Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis." Nature genetics 50.10 (2018): 1463-1473. mm10 chr13 53895001 57200000 56048376 56147390 ./CTCF_data/CTCF_FL-E115.narrowPeak SRX1975279 SRX4096942 dup-C duplication E12.5 limb buds https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3179588 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3733921 Franke Martin et al. "Formation of new chromatin domains determines pathogenicity of genomic duplications." Nature 538.7624 (2016): 265-269. mm10 chr11 109140001 115015000 110910796 112653378 ./CTCF_data/CTCF_E125.narrowPeak SRX5259427-SRX5259428 SRX4096957 dup-L duplication E12.5 limb buds https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3179588 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3179589 Franke Martin et al. "Formation of new chromatin domains determines pathogenicity of genomic duplications." Nature 538.7624 (2016): 265-269. mm10 chr11 109140001 115015000 111098275 112653378 ./CTCF_data/CTCF_E125.narrowPeak SRX5259427-SRX5259428 SRX4096956 Dup-LBor duplication_deletion E12.5 limb buds https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3179588 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3179591 Franke Martin et al. "Formation of new chromatin domains determines pathogenicity of genomic duplications." Nature 538.7624 (2016): 265-269. mm10 chr11 109140001 115015000 111098275 112653378 111522545 111540886 ./CTCF_data/CTCF_E125.narrowPeak SRX5259427-SRX5259428 SRX4096958 dup-S duplication E12.5 limb buds https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3179588 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3733922 Franke Martin et al. "Formation of new chromatin domains determines pathogenicity of genomic duplications." Nature 538.7624 (2016): 265-269. mm10 chr11 109140001 115015000 111891303 112311622 ./CTCF_data/CTCF_E125.narrowPeak SRX5259427-SRX5259428 SRX4096955 FirreKO_1 deletion MEF female https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR6129090-SRR6129091-SRR6129092-SRR6129093-SRR6129094-SRR6129095-SRR6129096-SRR6129097 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR6129098-SRR6129099-SRR6129100-SRR6129101-SRR6129102-SRR6129103-SRR6129104 Barutcu A. Rasim et al. "A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus." Nature communications 9.1 (2018): 1-11. mm10 chrX 50550000 50675000 50555286 50637116 ./CTCF_data/CTCF_MEF.narrowPeak SRX3230671-SRX3230678 SRX3230694-SRX3230695 FirreKO_2 deletion MEF male https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR6129105-SRR6129106-SRR6129107-SRR6129108 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR6129109-SRR6129110-SRR6129111-SRR6129112-SRR6129113-SRR6129114 Barutcu A. Rasim et al. "A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus." Nature communications 9.1 (2018): 1-11. mm10 chrX 50550000 50675000 50555286 50637116 ./CTCF_data/CTCF_MEF.narrowPeak SRX3230671-SRX3230678 SRX4096947 FirreKO_3 deletion mESC male https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR6158160-SRR6158161 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR6158158-SRR6158159 Barutcu A. Rasim et al. "A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus." Nature communications 9.1 (2018): 1-11. mm10 chrX 50550000 50675000 50555286 50637116 ./CTCF_data/CTCF_MEF.narrowPeak SRX3230671-SRX3230678 SRX4096948 i4i5 deletion_2 FLHL https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8284500-SRR8284501-SRR8984911 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8284495-SRR8284496 Paliou Christina et al. "Preformed chromatin topology assists transcriptional robustness of Shh during limb development." Proceedings of the National Academy of Sciences 116.25 (2019): 12390-12399. mm10 chr5 27460000 30345000 29293392 29293421 29336029 29336056 ./CTCF_data/CTCF_FLHL-E105.narrowPeak SRX5099280;SRX5099281 SRX4096949 i4i5ZRS_1 deletion_3 FLHL https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8284500-SRR8284501-SRR8984911 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8284497-SRR8284498 Paliou Christina et al. "Preformed chromatin topology assists transcriptional robustness of Shh during limb development." Proceedings of the National Academy of Sciences 116.25 (2019): 12390-12399. mm10 chr5 27460000 30345000 29293392 29293421 29336029 29336056 29314814 29314832 ./CTCF_data/CTCF_FLHL-E105.narrowPeak SRX5099280;SRX5099281 SRX4096952 i4i5ZRS_2 deletion_3 midbrain https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8284503-SRR8284504 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8984913-SRR8984914 Paliou Christina et al. "Preformed chromatin topology assists transcriptional robustness of Shh during limb development." Proceedings of the National Academy of Sciences 116.25 (2019): 12390-12399. mm10 chr5 27460000 30345000 29293392 29293421 29336029 29336056 29314814 29314832 ./CTCF_data/CTCF_FLHL-E105.narrowPeak SRX5099280;SRX5099281 SRX4096953 i4i5ZRSreg deletion_3 FLHL https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8284500-SRR8284501-SRR8984911 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8984915-SRR8984916 Paliou Christina et al. "Preformed chromatin topology assists transcriptional robustness of Shh during limb development." Proceedings of the National Academy of Sciences 116.25 (2019): 12390-12399. mm10 chr5 27460000 30345000 29293392 29293421 29336029 29336056 29314818 29315227 ./CTCF_data/CTCF_FLHL-E105.narrowPeak SRX5099280;SRX5099281 SRX4096951 Inv1 inversion forelimb E11.5 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR7500315 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR7500316 Kraft Katerina et al. "Serial genomic inversions induce tissue-specific architectural stripes gene misexpression and congenital malformations." Nature cell biology 21.3 (2019): 305-310. mm10 chr1 70945000 81015000 75279391 75902131 ./CTCF_data/CTCF_FL-E115.narrowPeak SRX1975279 SRX4096960 Inv1-Mm_1 inversion Hindlimb E11.5 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR6024961-SRR6024962-SRR6024963-SRR6024964 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR6451287-SRR7203995 Kragesteen Bjƒñrt K. et al. "Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis." Nature genetics 50.10 (2018): 1463-1473. mm10 chr13 53895001 57200000 56048376 56160753 ./CTCF_data/CTCF_HL-E115.narrowPeak SRX1975285-SRX1975286 SRX4096967 Inv1-Mm_2 inversion Forelimb E11.5 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR6024957-SRR6024958-SRR6024959-SRR6024960 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR6024979-SRR6024980 Kragesteen Bjƒñrt K. et al. "Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis." Nature genetics 50.10 (2018): 1463-1473. mm10 chr13 53895001 57200000 56048376 56160753 ./CTCF_data/CTCF_HL-E115.narrowPeak SRX1975285-SRX1975286 SRX4096968 Inv1d inversion forelimb E11.5 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR7500315 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR7500320 Kraft Katerina et al. "Serial genomic inversions induce tissue-specific architectural stripes gene misexpression and congenital malformations." Nature cell biology 21.3 (2019): 305-310. mm10 chr1 70945000 81015000 75650966 75655176 ./CTCF_data/CTCF_FL-E115.narrowPeak SRX1975279 SRX4096964 Inv2 inversion forelimb E11.5 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR7500315 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR7500317 Kraft Katerina et al. "Serial genomic inversions induce tissue-specific architectural stripes gene misexpression and congenital malformations." Nature cell biology 21.3 (2019): 305-310. mm10 chr1 70945000 81015000 75135035 75902131 ./CTCF_data/CTCF_FL-E115.narrowPeak SRX1975279 SRX4096961 Inv3 inversion forelimb E11.5 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR7500315 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR7500318 Kraft Katerina et al. "Serial genomic inversions induce tissue-specific architectural stripes gene misexpression and congenital malformations." Nature cell biology 21.3 (2019): 305-310. mm10 chr1 70945000 81015000 74887741 75902131 ./CTCF_data/CTCF_FL-E115.narrowPeak SRX1975279 SRX4096962 Inv4 inversion forelimb E11.5 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR7500315 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR7500319 Kraft Katerina et al. "Serial genomic inversions induce tissue-specific architectural stripes gene misexpression and congenital malformations." Nature cell biology 21.3 (2019): 305-310. mm10 chr1 70945000 81015000 7489655 78902131 ./CTCF_data/CTCF_FL-E115.narrowPeak SRX1975279 SRX4096963 InvC inversion E12.5 limb buds https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3179588 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8453396-SRR8453397 Franke Martin et al. "Formation of new chromatin domains determines pathogenicity of genomic duplications." Nature 538.7624 (2016): 265-269. mm10 chr11 109140001 115015000 111522535 112653434 ./CTCF_data/CTCF_E125.narrowPeak SRX5259427-SRX5259428 SRX4096965 InvF inversion E11.5 distal limb buds https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5099908 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5099911 Bianco Simona et al. "Polymer physics predicts the effects of structural variants on chromatin architecture." Nature genetics 50.5 (2018): 662-667. mm10 chr1 70945000 81010000 74786262 75902132 ./CTCF_data/CTCF_HL-E115.narrowPeak SRX1975285-SRX1975286 SRX4096959 InvIntra inversion E12.5 limb buds https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR3179588 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8453398-SRR8453399 Franke Martin et al. "Formation of new chromatin domains determines pathogenicity of genomic duplications." Nature 538.7624 (2016): 265-269. mm10 chr11 109140001 115015000 111540879 112653434 ./CTCF_data/CTCF_E125.narrowPeak SRX5259427-SRX5259428 SRX4096966 Kit30 deletion mast_cell mm10 chr5 74130000 76415000 75852780 75881218 ./CTCF_data/mast_cells.narrowPeak our data our data Kit30plus deletion mast_cell mm10 chr5 74130000 76415000 75736367 757336679 75852780 75881218 ./CTCF_data/mast_cells.narrowPeak our data our data Lprom deletion FLHL https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8284500-SRR8284501-SRR8984911 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8284499-SRR8984910 Paliou Christina et al. "Preformed chromatin topology assists transcriptional robustness of Shh during limb development." Proceedings of the National Academy of Sciences 116.25 (2019): 12390-12399. mm10 chr5 27460000 30345000 ./CTCF_data/CTCF_FLHL-E105.narrowPeak SRX5099280;SRX5099281 SRX4096945 MusDelB deletion E11.5 distal limb buds https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5099908 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR5099909 Bianco Simona et al. "Polymer physics predicts the effects of structural variants on chromatin architecture." Nature genetics 50.5 (2018): 662-667. mm10 chr1 70945000 81010000 76395828 78067689 ./CTCF_data/CTCF_HL-E115.narrowPeak SRX1975285-SRX1975286 SRX4096939 Neur1-Mm deletion Forelimb E11.5 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR6024957-SRR6024958-SRR6024959-SRR6024960 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR6024987-SRR6024988 Kragesteen Bjƒñrt K. et al. "Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis." Nature genetics 50.10 (2018): 1463-1473. mm10 chr13 53895001 57200000 56219601 56264136 ./CTCF_data/CTCF_FL-E115.narrowPeak SRX1975279 SRX4096943 ZRSreg deletion FLHL https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8284500-SRR8284501-SRR8984911 https://genedev.bionet.nsc.ru/site/hic_out/Unordered/INC_COST_3DBenchmark_[remake]/SRR8984912 Paliou Christina et al. "Preformed chromatin topology assists transcriptional robustness of Shh during limb development." Proceedings of the National Academy of Sciences 116.25 (2019): 12390-12399. mm10 chr5 27460000 30345000 29314818 29315227 ./CTCF_data/CTCF_FLHL-E105.narrowPeak SRX5099280;SRX5099281 SRX4096944