genome_locus_name	path_to_processed_hic_data	cell_type	locus_chr	locus_start	locus_end	organism	genome_assembly	Hi-C_raw_data	paper
K562_chr1_22to42Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/K562/	K562	chr1	22000000	42000000	human	hg19	SRR1658693,SRR1658694,SRR1658695,SRR1658696,SRR1658697,SRR1658698,SRR1658699,SRR1658700,SRR1658701,SRR1658702	"Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8. PMID: 25497547; PMCID: PMC5635824."
K562_chr19_36to56Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/K562/	K562	chr19	36000000	56000000	human	hg19	SRR1658693,SRR1658694,SRR1658695,SRR1658696,SRR1658697,SRR1658698,SRR1658699,SRR1658700,SRR1658701,SRR1658703	"Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8. PMID: 25497547; PMCID: PMC5635824."
K562_chr10_90to110Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/K562/	K562	chr19	90000000	110000000	human	hg19	SRR1658693,SRR1658694,SRR1658695,SRR1658696,SRR1658697,SRR1658698,SRR1658699,SRR1658700,SRR1658701,SRR1658704	"Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8. PMID: 25497547; PMCID: PMC5635824."
K562_chr21_22to42Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/K562/	K562	chr19	22000000	42000000	human	hg19	SRR1658693,SRR1658694,SRR1658695,SRR1658696,SRR1658697,SRR1658698,SRR1658699,SRR1658700,SRR1658701,SRR1658705	"Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8. PMID: 25497547; PMCID: PMC5635824."
K562_chr11_0to20Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/K562/	K562	chr11	0	20000000	human	hg19	SRR1658693,SRR1658694,SRR1658695,SRR1658696,SRR1658697,SRR1658698,SRR1658699,SRR1658700,SRR1658701,SRR1658706	"Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8. PMID: 25497547; PMCID: PMC5635824."
K562_chr22_27to47Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/K562/	K562	chr22	27000000	47000000	human	hg19	SRR1658693,SRR1658694,SRR1658695,SRR1658696,SRR1658697,SRR1658698,SRR1658699,SRR1658700,SRR1658701,SRR1658707	"Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8. PMID: 25497547; PMCID: PMC5635824."
GM12878_chr1_22to42Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/GM12878/	GM12878	chr1	22000000	42000000	human	hg19	SRR1658644,SRR1658645,SRR1658646,SRR1658647,SRR1658648	"Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8. PMID: 25497547; PMCID: PMC5635824."
GM12878_chr19_36to56Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/GM12878/	GM12878	chr19	36000000	56000000	human	hg19	SRR1658644,SRR1658645,SRR1658646,SRR1658647,SRR1658649	"Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8. PMID: 25497547; PMCID: PMC5635824."
Gm12878_chr10_90to110Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/GM12878/	GM12878	chr19	90000000	110000000	human	hg19	SRR1658644,SRR1658645,SRR1658646,SRR1658647,SRR1658650	"Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8. PMID: 25497547; PMCID: PMC5635824."
Gm12878_chr21_22to42Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/GM12878/	GM12878	chr19	22000000	42000000	human	hg19	SRR1658644,SRR1658645,SRR1658646,SRR1658647,SRR1658651	"Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8. PMID: 25497547; PMCID: PMC5635824."
Gm12878_chr11_0to20Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/GM12878/	GM12878	chr11	0	20000000	human	hg19	SRR1658644,SRR1658645,SRR1658646,SRR1658647,SRR1658652	"Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80. doi: 10.1016/j.cell.2014.11.021. Epub 2014 Dec 11. Erratum in: Cell. 2015 Jul 30;162(3):687-8. PMID: 25497547; PMCID: PMC5635824."
mESC_chr5_65to85Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/mESC/	mESC	chr5	65000000	85000000	mouse	mm10	 SRR5339748-SRR5339785	Bonev, Boyan, et al. “Multiscale 3D genome rewiring during mouse neural development.” Cell 171.3 (2017): 557-572.
mESC_chr10_59to79Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/mESC/	mESC	chr10	59000000	79000000	mouse	mm10	 SRR5339748-SRR5339786	Bonev, Boyan, et al. “Multiscale 3D genome rewiring during mouse neural development.” Cell 171.3 (2017): 557-572.
mESC_chr6_84to104Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/mESC/	mESC	chr6	84000000	104000000	mouse	mm10	 SRR5339748-SRR5339787	Bonev, Boyan, et al. “Multiscale 3D genome rewiring during mouse neural development.” Cell 171.3 (2017): 557-572.
mESC_chr8_23to43Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/mESC/	mESC	chr8	23000000	43000000	mouse	mm10	 SRR5339748-SRR5339788	Bonev, Boyan, et al. “Multiscale 3D genome rewiring during mouse neural development.” Cell 171.3 (2017): 557-572.
mESC_chr11_7to27Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/mESC/	mESC	chr11	7000000	27000000	mouse	mm10	 SRR5339748-SRR5339789	Bonev, Boyan, et al. “Multiscale 3D genome rewiring during mouse neural development.” Cell 171.3 (2017): 557-572.
Kc167_chr2L_5to20Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/Kc167/	Kc167	chr2L	5000000	20000000	drosophila	dm6	 SRR3452738, SRR3452739	Cube?as-Potts, Caelin, et al. “Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture.” Nucleic acids research 45.4 (2017): 1714-1730.
Kc167_chr2R_5to20Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/Kc167/	Kc167	chr2R	5000000	20000000	drosophila	dm6	 SRR3452738, SRR3452740	Cube?as-Potts, Caelin, et al. “Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture.” Nucleic acids research 45.4 (2017): 1714-1730.
Kc167_chr3L_5to20Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/Kc167/	Kc167	chr3L	5000000	20000000	drosophila	dm6	 SRR3452738, SRR3452741	Cube?as-Potts, Caelin, et al. “Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture.” Nucleic acids research 45.4 (2017): 1714-1730.
Kc167_chr3R_5to20Mb	https://genedev.bionet.nsc.ru/hic_out/Unordered/INC_COST_3DBenchmark_%5bremake%5d/Kc167/	Kc167	chr3R	5000000	20000000	drosophila	dm6	 SRR3452738, SRR3452742	Cube?as-Potts, Caelin, et al. “Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture.” Nucleic acids research 45.4 (2017): 1714-1730.