Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Bor_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  196,277,627
 Normal Paired: 175,258,525 (89.29%)
 Chimeric Paired: 18,621,392 (9.49%)
 Chimeric Ambiguous: 1,940,593 (0.99%)
 Unmapped: 457,117 (0.23%)
 Ligation Motif Present: 60,734 (0.03%)
Alignable (Normal+Chimeric Paired): 193,879,917 (98.78%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Bor_Mut/aligned inter.txt
Intra-fragment Reads: 27,504,681 (14.01% / 52.58%)
Below MAPQ Threshold: 3,289,333 (1.68% / 6.29%)
Hi-C Contacts: 21,514,268 (10.96% / 41.13%)
 Ligation Motif Present: 17,903  (0.01% / 0.03%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 27% - 25% - 24% - 23%
Inter-chromosomal: 3,935,306  (2.00% / 7.52%)
Intra-chromosomal: 17,578,962  (8.96% / 33.61%)
Short Range (<20Kb): 11,196,276  (5.70% / 21.40%)
Long Range (>20Kb): 6,382,668  (3.25% / 12.20%)