Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/BorC1-2_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  183,648,430
 Normal Paired: 179,699,250 (97.85%)
 Chimeric Paired: 7,202 (0.00%)
 Chimeric Ambiguous: 5,660 (0.00%)
 Unmapped: 3,936,318 (2.14%)
 Ligation Motif Present: 43,993 (0.02%)
Alignable (Normal+Chimeric Paired): 179,706,452 (97.85%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/BorC1-2_Mut/aligned inter.txt
Intra-fragment Reads: 44,305,379 (24.13% / 50.16%)
Below MAPQ Threshold: 14,831,034 (8.08% / 16.79%)
Hi-C Contacts: 29,200,169 (15.90% / 33.06%)
 Ligation Motif Present: 16,381  (0.01% / 0.02%)
 3' Bias (Long Range): 79% - 21%
 Pair Type %(L-I-O-R): 26% - 24% - 24% - 26%
Inter-chromosomal: 3,846,202  (2.09% / 4.35%)
Intra-chromosomal: 25,353,967  (13.81% / 28.70%)
Short Range (<20Kb): 16,802,981  (9.15% / 19.02%)
Long Range (>20Kb): 8,550,864  (4.66% / 9.68%)