Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Dup-S_WT -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  322,660,058
 Normal Paired: 294,661,695 (91.32%)
 Chimeric Paired: 22,998,439 (7.13%)
 Chimeric Ambiguous: 2,502,277 (0.78%)
 Unmapped: 2,497,647 (0.77%)
 Ligation Motif Present: 84,727 (0.03%)
Alignable (Normal+Chimeric Paired): 317,660,134 (98.45%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Dup-S_WT/aligned inter.txt
Intra-fragment Reads: 40,709,844 (12.62% / 46.59%)
Below MAPQ Threshold: 9,143,202 (2.83% / 10.46%)
Hi-C Contacts: 37,528,250 (11.63% / 42.95%)
 Ligation Motif Present: 22,920  (0.01% / 0.03%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 26% - 25% - 24% - 25%
Inter-chromosomal: 7,860,716  (2.44% / 9.00%)
Intra-chromosomal: 29,667,534  (9.19% / 33.95%)
Short Range (<20Kb): 16,386,256  (5.08% / 18.75%)
Long Range (>20Kb): 13,281,195  (4.12% / 15.20%)