Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/BorC1-4_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  236,727,456
 Normal Paired: 231,832,486 (97.93%)
 Chimeric Paired: 11,886 (0.01%)
 Chimeric Ambiguous: 6,221 (0.00%)
 Unmapped: 4,876,863 (2.06%)
 Ligation Motif Present: 54,583 (0.02%)
Alignable (Normal+Chimeric Paired): 231,844,372 (97.94%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/BorC1-4_Mut/aligned inter.txt
Intra-fragment Reads: 35,900,489 (15.17% / 44.90%)
Below MAPQ Threshold: 12,789,525 (5.40% / 16.00%)
Hi-C Contacts: 31,261,266 (13.21% / 39.10%)
 Ligation Motif Present: 15,008  (0.01% / 0.02%)
 3' Bias (Long Range): 79% - 21%
 Pair Type %(L-I-O-R): 25% - 24% - 24% - 26%
Inter-chromosomal: 6,774,035  (2.86% / 8.47%)
Intra-chromosomal: 24,487,231  (10.34% / 30.63%)
Short Range (<20Kb): 14,202,742  (6.00% / 17.76%)
Long Range (>20Kb): 10,284,440  (4.34% / 12.86%)