Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/DelBs_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  206,166,983
 Normal Paired: 180,562,280 (87.58%)
 Chimeric Paired: 22,401,007 (10.87%)
 Chimeric Ambiguous: 2,714,668 (1.32%)
 Unmapped: 489,028 (0.24%)
 Ligation Motif Present: 32,329 (0.02%)
Alignable (Normal+Chimeric Paired): 202,963,287 (98.45%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/DelBs_Mut/aligned inter.txt
Intra-fragment Reads: 29,971,884 (14.54% / 52.46%)
Below MAPQ Threshold: 4,244,077 (2.06% / 7.43%)
Hi-C Contacts: 22,915,885 (11.12% / 40.11%)
 Ligation Motif Present: 11,385  (0.01% / 0.02%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 28% - 25% - 25% - 22%
Inter-chromosomal: 3,842,673  (1.86% / 6.73%)
Intra-chromosomal: 19,073,212  (9.25% / 33.38%)
Short Range (<20Kb): 11,141,135  (5.40% / 19.50%)
Long Range (>20Kb): 7,932,069  (3.85% / 13.88%)