Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/DelL-Mm_Mut -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  182,353,993
 Normal Paired: 173,146,347 (94.95%)
 Chimeric Paired: 6,917,133 (3.79%)
 Chimeric Ambiguous: 626,007 (0.34%)
 Unmapped: 1,664,506 (0.91%)
 Ligation Motif Present: 53,553 (0.03%)
Alignable (Normal+Chimeric Paired): 180,063,480 (98.74%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/DelL-Mm_Mut/aligned inter.txt
Intra-fragment Reads: 22,767,988 (12.49% / 47.27%)
Below MAPQ Threshold: 6,641,200 (3.64% / 13.79%)
Hi-C Contacts: 18,758,059 (10.29% / 38.94%)
 Ligation Motif Present: 11,123  (0.01% / 0.02%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,557,596  (1.95% / 7.39%)
Intra-chromosomal: 15,200,463  (8.34% / 31.56%)
Short Range (<20Kb): 9,473,638  (5.20% / 19.67%)
Long Range (>20Kb): 5,726,744  (3.14% / 11.89%)