Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/FirreKO_fem_Mut -s HindIII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_HindIII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  462,912,572
 Normal Paired: 233,353,932 (50.41%)
 Chimeric Paired: 166,486,130 (35.96%)
 Chimeric Ambiguous: 25,570,893 (5.52%)
 Unmapped: 37,501,617 (8.10%)
 Ligation Motif Present: 264,300,781 (57.10%)
Alignable (Normal+Chimeric Paired): 399,840,062 (86.37%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/FirreKO_fem_Mut/aligned inter.txt
Intra-fragment Reads: 43,146,877 (9.32% / 15.18%)
Below MAPQ Threshold: 34,171,587 (7.38% / 12.02%)
Hi-C Contacts: 206,967,674 (44.71% / 72.80%)
 Ligation Motif Present: 152,689,581  (32.98% / 53.71%)
 3' Bias (Long Range): 93% - 7%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 36,062,413  (7.79% / 12.69%)
Intra-chromosomal: 170,905,261  (36.92% / 60.12%)
Short Range (<20Kb): 61,583,955  (13.30% / 21.66%)
Long Range (>20Kb): 109,321,247  (23.62% / 38.45%)