Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/mastocytes/46 -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  56,636,397
 Normal Paired: 31,322,303 (55.30%)
 Chimeric Paired: 17,310,432 (30.56%)
 Chimeric Ambiguous: 5,144,090 (9.08%)
 Unmapped: 2,859,572 (5.05%)
 Ligation Motif Present: 22,580,918 (39.87%)
Alignable (Normal+Chimeric Paired): 48,632,735 (85.87%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/mastocytes/46/aligned inter.txt
Intra-fragment Reads: 4,846,193 (8.56% / 11.20%)
Below MAPQ Threshold: 4,162,255 (7.35% / 9.62%)
Hi-C Contacts: 34,271,038 (60.51% / 79.19%)
 Ligation Motif Present: 14,929,500  (26.36% / 34.50%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 14,719,708  (25.99% / 34.01%)
Intra-chromosomal: 19,551,330  (34.52% / 45.17%)
Short Range (<20Kb): 6,984,060  (12.33% / 16.14%)
Long Range (>20Kb): 12,567,264  (22.19% / 29.04%)