Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/mastocytes/712 -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  60,360,303
 Normal Paired: 34,995,941 (57.98%)
 Chimeric Paired: 16,628,319 (27.55%)
 Chimeric Ambiguous: 5,607,004 (9.29%)
 Unmapped: 3,129,039 (5.18%)
 Ligation Motif Present: 23,906,795 (39.61%)
Alignable (Normal+Chimeric Paired): 51,624,260 (85.53%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/mastocytes/712/aligned inter.txt
Intra-fragment Reads: 6,635,225 (10.99% / 14.41%)
Below MAPQ Threshold: 4,520,481 (7.49% / 9.81%)
Hi-C Contacts: 34,901,495 (57.82% / 75.78%)
 Ligation Motif Present: 15,606,497  (25.86% / 33.89%)
 3' Bias (Long Range): 73% - 27%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 11,064,495  (18.33% / 24.02%)
Intra-chromosomal: 23,837,000  (39.49% / 51.76%)
Short Range (<20Kb): 7,425,200  (12.30% / 16.12%)
Long Range (>20Kb): 16,411,783  (27.19% / 35.63%)