Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/mastocytes/25 -s DpnII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_DpnII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  34,898,944
 Normal Paired: 20,565,915 (58.93%)
 Chimeric Paired: 9,483,328 (27.17%)
 Chimeric Ambiguous: 2,845,662 (8.15%)
 Unmapped: 2,004,039 (5.74%)
 Ligation Motif Present: 16,266,928 (46.61%)
Alignable (Normal+Chimeric Paired): 30,049,243 (86.10%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/mastocytes/25/aligned inter.txt
Intra-fragment Reads: 3,205,455 (9.18% / 12.79%)
Below MAPQ Threshold: 3,337,984 (9.56% / 13.31%)
Hi-C Contacts: 18,527,372 (53.09% / 73.90%)
 Ligation Motif Present: 10,215,951  (29.27% / 40.75%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 9,716,488  (27.84% / 38.76%)
Intra-chromosomal: 8,810,884  (25.25% / 35.14%)
Short Range (<20Kb): 3,023,900  (8.66% / 12.06%)
Long Range (>20Kb): 5,786,980  (16.58% / 23.08%)