Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 6 threads; java version "1.8.0_45"; ./juicer.sh -t 6 -g mm10 -D /mnt/storage/home/aselsukova/distributives/juicer -d /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Lprom_Mut -s HindIII -p /mnt/storage/home/aselsukova/genomes/chrom.sizes/chrom.sizes_mm10 -y /mnt/storage/home/aselsukova/genomes/restriction_sites/mm10_HindIII.txt -z /mnt/storage/home/aselsukova/genomes/references/mm10/mm10.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  134,412,865
 Normal Paired: 126,680,275 (94.25%)
 Chimeric Paired: 5,281,070 (3.93%)
 Chimeric Ambiguous: 1,603,774 (1.19%)
 Unmapped: 847,746 (0.63%)
 Ligation Motif Present: 13,610 (0.01%)
Alignable (Normal+Chimeric Paired): 131,961,345 (98.18%)
java -Djava.awt.headless=true -Xmx16000m -jar /mnt/storage/home/aselsukova/distributives/juicer/scripts/common/juicer_tools.jar LibraryComplexity /mnt/storage/home/aselsukova/distributives/juicer/scratch/Rearr_data/Lprom_Mut/aligned inter.txt
Intra-fragment Reads: 21,002,158 (15.63% / 52.13%)
Below MAPQ Threshold: 10,408,907 (7.74% / 25.84%)
Hi-C Contacts: 8,876,446 (6.60% / 22.03%)
 Ligation Motif Present: 1,183  (0.00% / 0.00%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 2,326,683  (1.73% / 5.78%)
Intra-chromosomal: 6,549,763  (4.87% / 16.26%)
Short Range (<20Kb): 2,362,008  (1.76% / 5.86%)
Long Range (>20Kb): 4,187,748  (3.12% / 10.39%)